The original CUTE (Correlation Utilities and Two point Estimation) code was written by David Alonso and is available at https://github.com/damonge/CUTE. This version ...

calculate correlation.py: Python code to calculate the correlation between mRNA level and CBI for strains sequenced at JGI. Selected gene list was also provided in the repository. FPKM files ...

Abstract: Python is an increasingly ... We intended to identify five code smell types in both class and function levels, i.e., long method, long parameter list, large class long scope chaining, and ...