The divergence of ASIC designs makes it difficult to run commonly used modern sequencing analysis pipelines due to software ...

Tomescu: Safe and Complete Algorithms for Dynamic Programming Problems ... check the page of our ERC Starting Grant "Safe and Complete Algorithms for Bioinformatics". String Problems Generalized to ...

Professor Veli Mäkinen works in the areas of algorithmic bioinformatics and succinct data structures ... Frequently used techniques include dynamic programming, reductions, stringology, and data ...

Before BLAST, alignment programs used dynamic programming algorithms, such as the Needleman-Wunsch and Smith-Waterman algorithms, that required long processing times and the use of supercomputers ...

The students are encouraged to think and use their acquired knowledge of algorithms in practical and highly applicable programming exercises. The Dynamic Programming and Optimal Control class focuses ...

Through collaboration with colleagues in areas such as Computer Science, Biology, Oceanography and Statistics, researchers in the Algorithms and Bioinformatics cluster develop tools that have gained ...