Some of the common algorithms for phylogenetic analysis are UPGMA, NJ, Maximum Parsimony, Maximum Likelihood, and Bayesian Inference. Add your perspective Help others by sharing more (125 ...

This code implements the popular RAxML search algorithm for maximum likelihood based inference of phylogenetic trees. ... Bioinformatics (2015) 31 (15): 2577-2579. It is up to 4 times faster than ...

Yufeng Wu, "An Algorithm for Computing the Gene Tree Probability under the Multispecies Coalescent and its Application in the Inference of Population Tree", Bioinformatics, 32(12):i225-i233, 2016.

The use of maximum likelihood estimation has become extremely popular in a vast number of fields. Statistical methods are paramount for analysing biological data and maximum likelihood estimation ...

Bayesian estimation and maximum likelihood methods represent two central paradigms in modern statistical inference. Bayesian estimation incorporates prior beliefs through Bayes’ theorem ...

This maximum likelihood approach was first proposed in the scAge method, which was developed to estimate the age of a samples from single cell methylation data. In contrast to scAge, our method is ...