Genome Reconstruction: It has been used to map the three-dimensional genome architecture of extinct species, such as the 52,000-year-old woolly mammoth (Mammuthus primigenius), …

Feb 25, 2021 · While Hi-C maps can be pleasing to look at, it can take time to learn how to read them. This article will focus on enabling one to interpret these data-rich figures. A summary of …

We first discuss methods and considerations that are important for using deep sequencing data to build bias-free genome-wide chromatin interaction maps.

Feb 10, 2022 · We present HiCmapTools, a tool for biologists to efficiently calculate and analyze HiC maps. The complete program provides multi-query modes and analysis tools. We have …

Visualizing Hi-C contact maps is often a necessary step in exploratory data analysis. A Hi-C contact map is usually displayed as a heatmap, in which: Each axis represents a section of the …

Feb 3, 2017 · Heat maps can be constructed for the full genome (Fig. 1a) or for individual chromosomes (Fig. 1 b). Low resolution (1–10 Mb) contact matrices are typically sufficient for …

hicmaptools is a command line tool to access HiC maps. The complete program provides multi-query modes and analysis tools. Interactive jobs should be used for debugging, graphics, or …

HiCExplorer addresses the common tasks of Hi-C data analysis from processing to visualization. HiCExplorer is available as a command line suite of tools on this GitHub repository. A Galaxy …

Feb 10, 2022 · Results: We present HiCmapTools, a tool for biologists to efficiently calculate and analyze HiC maps. The complete program provides multi-query modes and analysis tools. We …

Web-based visual exploration and comparison of Hi-C genome interaction maps and other genomic tracks